PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028969_P01
Common NameEREB185, LOC103648466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 252aa    MW: 26853.8 Da    PI: 4.5826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028969_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1860109255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+ +++g
  GRMZM2G028969_P01  60 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAAVAIKG 109
                        69****998.**********843...6**********************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1160108IPR001471AP2/ERF domain
SMARTSM003806.6E-3560123IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2160118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3160118IPR001471AP2/ERF domain
PROSITE profilePS5103222.31360117IPR001471AP2/ERF domain
PRINTSPR003677.9E-106172IPR001471AP2/ERF domain
CDDcd000183.07E-2161119No hitNo description
PRINTSPR003677.9E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEHEQVSPQV SDGCTCTCTY SSSSNATSGS LNGSSSPTSS DDSGGKGTNK RPRRDLKHPT  60
YRGVRMRAWG KWVSEIREPR KKSRIWLGTF DNPEMAARAH DAAAVAIKGR AAHLNFPDLA  120
HDLPRAASAA PKDVQAAAAL AAATVPAPSP VVAPSCGHGH GLDDDADTET EEDLPPQQAM  180
PECESGNQQA QLQLACADIG VGLGYTFLDV PDGLLDFGYM LSPLPLPAYC GSPWDDIADD  240
LCFEEPLLLW EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1461117360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028969
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028969_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278640.0KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671157.10.0PREDICTED: ethylene-responsive transcription factor ERF023-like
TrEMBLA0A060D2110.0A0A060D211_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G028969_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-28ERF family protein